no.uio.labmed.biojava.alignment
Class StringSequenceTools

java.lang.Object
  |
  +--no.uio.labmed.biojava.alignment.StringSequenceTools

public class StringSequenceTools
extends java.lang.Object

Helper class for making sequences over the alphabet of characters.


Constructor Summary
StringSequenceTools()
           
 
Method Summary
static org.biojava.bio.symbol.SymbolList createSymbolList(java.lang.String s)
           
static org.biojava.bio.symbol.SymbolList createSymbolList(java.lang.String s, org.biojava.bio.symbol.Alphabet alpha)
           
static org.biojava.bio.symbol.Alphabet getAlphabet()
           
static org.biojava.bio.symbol.Symbol getSymbol(java.lang.String s)
           
 
Methods inherited from class java.lang.Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait
 

Constructor Detail

StringSequenceTools

public StringSequenceTools()
Method Detail

getAlphabet

public static org.biojava.bio.symbol.Alphabet getAlphabet()

getSymbol

public static org.biojava.bio.symbol.Symbol getSymbol(java.lang.String s)

createSymbolList

public static org.biojava.bio.symbol.SymbolList createSymbolList(java.lang.String s)

createSymbolList

public static org.biojava.bio.symbol.SymbolList createSymbolList(java.lang.String s,
                                                                 org.biojava.bio.symbol.Alphabet alpha)
                                                          throws org.biojava.bio.symbol.IllegalAlphabetException
org.biojava.bio.symbol.IllegalAlphabetException