no.uio.labmed.biojava.alignment
Class Test

java.lang.Object
  |
  +--no.uio.labmed.biojava.alignment.Test

public class Test
extends java.lang.Object

Test program.


Constructor Summary
Test()
           
 
Method Summary
 org.biojava.bio.symbol.Alphabet charAlphabet(java.lang.String alphabetString)
           
static org.biojava.bio.seq.Sequence getSequence(java.lang.String filename)
           
 void init()
           
static void main(java.lang.String[] args)
           
static SimpleAligner proteinAligner()
           
static java.util.SortedSet sortFeatures(org.biojava.bio.seq.FeatureHolder seq)
           
 void test(java.lang.String[] args)
           
 void test2()
           
 
Methods inherited from class java.lang.Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait
 

Constructor Detail

Test

public Test()
Method Detail

main

public static void main(java.lang.String[] args)

init

public void init()

test2

public void test2()

test

public void test(java.lang.String[] args)

proteinAligner

public static SimpleAligner proteinAligner()

getSequence

public static org.biojava.bio.seq.Sequence getSequence(java.lang.String filename)

sortFeatures

public static java.util.SortedSet sortFeatures(org.biojava.bio.seq.FeatureHolder seq)

charAlphabet

public org.biojava.bio.symbol.Alphabet charAlphabet(java.lang.String alphabetString)