MicroArrayscripts and the
process_arrays.rscript which may be used to merge data series from two different array designs.
Agilent array design annotation files can be obtained from
which annoyingly requires registration, and may not function in all browser. To find the annotation files in eArray, log in, go to Microarray, Browse Microarray Designs, and then identify the array design you want annotation files for. Select download for this, and then you can choose which annotation files to download. I have for the most part used the Gene list (filename contains
GeneList) file, but you could alternatively get the All annotations (filename contains
AA) file. These annotation files tend to have names on the form
If you have difficulty getting eArray to work or finding the appropriate files, please send them an email and ask for assistance: they deserve the trouble when they are making it this inconvenient to get to the annotation files!