Recent publications

The following are publications from after switching to bioinformatics, i.e. not including previous research.

• To appear in Molecular & Cellular Proteomics
  Predicting physical interactions between protein complexes
  T. Clancy, E.A. Rødland, S. Nygård, E. Hovig
• To appear in Science Communication
  Quantitative Frame Analysis of How the Gene Concept Is Presented in Tabloid and Elite Newspapers
  R.B. Carver, E.A. Rødland, J. Breivik
• PLoS ONE 2011 Mar; 6(3): e17845.
  Combining Gene Signatures Improves Prediction of Breast Cancer Survival
  X. Zhao, E.A. Rødland, T. Sørlie, B. Naume, A. Langerød, A. Frigessi, V.N. Kristensen, A.-L. Børresen-Dale, O.C. Lingjærde
• PLoS ONE 2011 Feb; 6(2): e16915.
  miRNA-mRNA Integrated Analysis Reveals Roles for miRNAs in Primary Breast Tumors
  E. Enerly, I. Steinfeld, K. Kleivi, S.-K. Leivonen, M.R. Aure, H.G. Russnes, J.A. Rønneberg, H. Johnsen, R. Navon, E. Rødland, R. Mäkelä, B. Naume, M. Perälä, O. Kallioniemi, V.N. Kristensen, Z. Yakhini, A.-L. Børresen-Dale
• Human Mutation 2010 Dec; 31(12): 1316–25.
  Impact of DNA physical properties on local sequence bias of human mutation
  S. Nakken, E.A. Rødland, E. Hovig
• The Lancet Oncology 2010 Aug; 11(8): 719-20.
  The importance of gene-centring microarray data
  T. Sørlie, E. Borgan, S. Myhre, H.K. Vollan, H. Russnes, X. Zhao, G. Nilsen, O.C. Lingjærde, A.-L. Børresen-Dale, E. Rødland
• J. Mol. Evol. 2010 Mar; 70(3): 266-74.
  Unstable DNA Repair Genes Shaped by Their Own Sequence Modifying Phenotypes
  D. Falster, S. Nakken, M. Bergem-Ohr, E.A. Rødland, J. Breivik
• FEMS Immunology & Medical Microbiology 2009; 56(2):151-61.
  Characterization of the major formamidopyrimidine-DNA glycosylase homolog in Mycobacterium tuberculosis and its linkage to variable tandem repeats
  I. Olsen, S. Balasingham, T. Davidsen, E. Debebe, E.A. Rødland, D. van Soolingen, K. Kremer, I. Alseth, T. Tønjum
• Bioinformatics 2009 Apr 15;25(8):996-1003.
  Predicting helix-helix interactions from residue contacts in membrane proteins
  A. Lo,Y.Y. Chiu, E.A. Rødland, P.C. Lyu, T.Y. Sung, W.L. Hsu
• BMC Genomics 2009;10(43).
  Large-scale inference of the point mutational spectrum in human segmental duplications
  S. Nakken, E.A. Rødland, T. Rognes, E. Hovig
• J. Bacteriol. 2007 Aug;189(15):5728-37.
  Genetic interactions of DNA repair pathways in the pathogen Neisseria meningitidis
  T. Davidsen, H.K. Tuven, M. Bjørås, E.A. Rødland, T. Tønjum
• Nucleic Acids Res. 2007;35(9), 3100-8.
  RNAmmer: consistent and rapid annotation of ribosomal RNA genes
  K. Lagesen, P. Hallin, E.A. Rødland, H.-H. Stærfeldt, T. Rognes, D. Ussery
• FEMS Immunol Med Microbiol. 2007 Mar;49(2), 243-51.
  DNA repair profiles of disease-associated isolates of Neisseria meningitidis
  T. Davidsen, E.K. Amundsen, E.A. Rødland, T. Tønjum
• J. Comp. Biol. 13, no. 6 (2006), 1197-1213.
  Pseudoknots in RNA Secondary Structures: Representation, Enumeration, and Prevalence
  E. A. Rødland
  - Supplement on computations (including Maple code)
• Biometrika 93, no. 3 (2006), 742-746.
  Simes' procedure is 'valid on average'
  E. A. Rødland
• Adv. in Appl. Probab. 38, no. 1 (2006), 116-133.
  Exact distribution of word counts in shuffled sequences
  E.A.Rødland
  - Correction: Adv. in Appl. Probab. 38, no. 2 (2006), 580.
• Nucleic Acids Res. 32, no. 3 (2004), 1050-8.
  Biased distribution of DNA uptake sequences towards genome maintenance genes.
  T. Davidsen, E.A. Rødland, K. Lagesen, E. Seeberg, T. Rognes, T. Tønjum