Recent publications

The following are publications from after switching to bioinformatics, i.e. not including previous research.

Nucleic Acids Res. 32, no. 3 (2004), 1050-8.
Biased distribution of DNA uptake sequences towards genome maintenance genes.
T. Davidsen, E.A. Rødland, K. Lagesen, E. Seeberg, T. Rognes, T. Tønjum
Adv. in Appl. Probab. 38, no. 1 (2006), 116-133.
Exact distribution of word counts in shuffled sequences
E.A.Rødland
- Correction: Adv. in Appl. Probab. 38, no. 2 (2006), 580.
Biometrika 93, no. 3 (2006), 742-746.
Simes' procedure is 'valid on average'
E. A. Rødland
J. Comp. Biol. 13, no. 6 (2006), 1197-1213.
Pseudoknots in RNA Secondary Structures: Representation, Enumeration, and Prevalence
E. A. Rødland
- Supplement on computations (including Maple code)
FEMS Immunol Med Microbiol. 2007 Mar;49(2), 243-51.
DNA repair profiles of disease-associated isolates of Neisseria meningitidis
T. Davidsen, E.K. Amundsen, E.A. Rødland, T. Tønjum
Nucleic Acids Res. 2007;35(9), 3100-8.
RNAmmer: consistent and rapid annotation of ribosomal RNA genes
K. Lagesen, P. Hallin, E.A. Rødland, H.-H. Stærfeldt, T. Rognes, D. Ussery
J Bacteriol. 2007 Aug;189(15):5728-37.
Genetic interactions of DNA repair pathways in the pathogen Neisseria meningitidis
T. Davidsen, H.K. Tuven, M. Bjørås, E.A. Rødland, T. Tønjum
BMC Genomics 2009;10(43).
Large-scale inference of the point mutational spectrum in human segmental duplications
S. Nakken, E.A. Rødland, T. Rognes, E. Hovig
Bioinformatics 2009 Apr 15;25(8):996-1003.
Predicting helix-helix interactions from residue contacts in membrane proteins
A. Lo,Y.Y. Chiu, E.A. Rødland, P.C. Lyu, T.Y. Sung, W.L. Hsu
FEMS Immunology & Medical Microbiology 2009; 56(2):151-61.
Characterization of the major formamidopyrimidine-DNA glycosylase homolog in Mycobacterium tuberculosis and its linkage to variable tandem repeats
I. Olsen, S. Balasingham, T. Davidsen, E. Debebe, E.A. Rødland, D. van Soolingen, K. Kremer, I. Alseth, T. Tønjum